Detailed information of SNP:
|
SNP ID:
sf1000966593(Gbrowse)
Chromosome: chr10 Position: 966593 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 55.51% | 44.49% |
| All Indica | 779 | 27.98% | 72.02% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 359 | 42.34% | 57.66% |
| Indica II | 211 | 11.37% | 88.63% |
| Indica Intermediate | 209 | 20.10% | 79.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000966593 | G->A | LOC_Os10g02560(LOC_Os10g02560.1) | Synonymous |