Detailed information of SNP:
|
SNP ID:
sf1000967190(Gbrowse)
Chromosome: chr10 Position: 967190 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 54.51% | 45.49% |
| All Indica | 759 | 24.64% | 75.36% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 64 | 45.31% | 54.69% |
| Indica I | 346 | 37.28% | 62.72% |
| Indica II | 210 | 10.48% | 89.52% |
| Indica Intermediate | 203 | 17.73% | 82.27% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000967190 | G->A | LOC_Os10g02560(LOC_Os10g02560.1) | INTRON |