Detailed information of SNP:
|
SNP ID:
sf1000983365(Gbrowse)
Chromosome: chr10 Position: 983365 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1355 | 91.22% | 8.78% |
| All Indica | 739 | 86.87% | 13.13% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 65 | 75.38% | 24.62% |
| Indica I | 348 | 87.07% | 12.93% |
| Indica II | 195 | 85.64% | 14.36% |
| Indica Intermediate | 196 | 87.76% | 12.24% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000983365 | T->C | INTERGENIC | None |