Detailed information of SNP:
|
SNP ID:
sf1000985078(Gbrowse)
Chromosome: chr10 Position: 985078 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 96.99% | 3.01% |
| All Indica | 781 | 96.03% | 3.97% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 60 | 88.33% | 11.67% |
| Indica I | 369 | 96.21% | 3.79% |
| Indica II | 206 | 95.15% | 4.85% |
| Indica Intermediate | 206 | 96.60% | 3.40% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000985078 | A->G | INTERGENIC | None |