Detailed information of SNP:
|
SNP ID:
sf1000989927(Gbrowse)
Chromosome: chr10 Position: 989927 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 63.15% | 36.85% |
| All Indica | 794 | 97.61% | 2.39% |
| All Japonica | 495 | 6.06% | 93.94% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 333 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000989927 | A->G | INTERGENIC | None |