Detailed information of SNP:
|
SNP ID:
sf1000993249(Gbrowse)
Chromosome: chr10 Position: 993249 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 55.31% | 44.69% |
| All Indica | 767 | 87.74% | 12.26% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 358 | 87.99% | 12.01% |
| Indica II | 204 | 84.80% | 15.20% |
| Indica Intermediate | 205 | 90.24% | 9.76% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000993249 | T->A | LOC_Os10g02600(LOC_Os10g02600.1) | Non-Synonymous SNP |