Detailed information of SNP:
|
SNP ID:
sf1000993353(Gbrowse)
Chromosome: chr10 Position: 993353 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1328 | 94.95% | 5.05% |
| All Indica | 720 | 91.11% | 8.89% |
| All Japonica | 490 | 100.00% | 0.00% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 332 | 89.16% | 10.84% |
| Indica II | 189 | 92.59% | 7.41% |
| Indica Intermediate | 199 | 92.96% | 7.04% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1000993353 | C->T | LOC_Os10g02600(LOC_Os10g02600.1) | Non-Synonymous SNP |