Detailed information of SNP:
|
SNP ID:
sf1001021556(Gbrowse)
Chromosome: chr10 Position: 1021556 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 79.94% | 20.06% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 496 | 51.01% | 48.99% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 68.96% | 31.04% |
| Tropical Japonica | 93 | 9.68% | 90.32% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001021556 | C->T | INTERGENIC | None |