Detailed information of SNP:
|
SNP ID:
sf1001022531(Gbrowse)
Chromosome: chr10 Position: 1022531 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 79.63% | 20.37% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 479 | 46.35% | 53.65% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 330 | 60.61% | 39.39% |
| Tropical Japonica | 85 | 10.59% | 89.41% |
| Japonica Intermediate | 64 | 20.31% | 79.69% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001022531 | A->G | LOC_Os10g02644(LOC_Os10g02644.1) | Synonymous |