Detailed information of SNP:
|
SNP ID:
sf1001051677(Gbrowse)
Chromosome: chr10 Position: 1051677 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 97.30% | 2.70% |
| All Indica | 794 | 96.73% | 3.27% |
| All Japonica | 491 | 97.76% | 2.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 93.26% | 6.74% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 91.11% | 8.89% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001051677 | G->A | INTERGENIC | None |