Detailed information of SNP:
|
SNP ID:
sf1001095891(Gbrowse)
Chromosome: chr10 Position: 1095891 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 78.69% | 21.31% |
| All Indica | 797 | 66.75% | 33.25% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 374 | 75.94% | 24.06% |
| Indica II | 213 | 40.85% | 59.15% |
| Indica Intermediate | 210 | 76.67% | 23.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001095891 | A->G | LOC_Os10g02770(LOC_Os10g02770.1) | SNPs that introduce initiation codons |