Detailed information of SNP:
|
SNP ID:
sf1001110406(Gbrowse)
Chromosome: chr10 Position: 1110406 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 75.00% | 25.00% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 494 | 48.99% | 51.01% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 84.00% | 16.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 334 | 64.67% | 35.33% |
| Tropical Japonica | 92 | 7.61% | 92.39% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001110406 | C->T | INTERGENIC | None |