Detailed information of SNP:
|
SNP ID:
sf1001114908(Gbrowse)
Chromosome: chr10 Position: 1114908 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 80.74% | 19.26% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 490 | 50.20% | 49.80% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 64.48% | 35.52% |
| Tropical Japonica | 89 | 12.36% | 87.64% |
| Japonica Intermediate | 66 | 28.79% | 71.21% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001114908 | G->A | LOC_Os10g02790(LOC_Os10g02790.1) | Synonymous |