Detailed information of SNP:
|
SNP ID:
sf1001117117(Gbrowse)
Chromosome: chr10 Position: 1117117 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 93.79% | 6.21% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 494 | 92.71% | 7.29% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 332 | 89.46% | 10.54% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001117117 | G->A | INTERGENIC | None |