Detailed information of SNP:
|
SNP ID:
sf1001141041(Gbrowse)
Chromosome: chr10 Position: 1141041 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 77.94% | 22.06% |
| All Indica | 750 | 90.27% | 9.73% |
| All Japonica | 497 | 60.76% | 39.24% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 340 | 85.88% | 14.12% |
| Indica II | 208 | 93.75% | 6.25% |
| Indica Intermediate | 202 | 94.06% | 5.94% |
| Temperate Japonica | 335 | 44.18% | 55.82% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001141041 | A->G | INTERGENIC | None |