Detailed information of SNP:
|
SNP ID:
sf1001210657(Gbrowse)
Chromosome: chr10 Position: 1210657 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 94.43% | 5.57% |
| All Indica | 798 | 92.36% | 7.64% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001210657 | T->C | INTERGENIC | None |