Detailed information of SNP:



SNP ID: sf1001212172(Gbrowse)

Chromosome: chr10

Position: 1212172
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 52.82% 47.18%
All Indica798 17.92% 82.08%
All Japonica497 99.60% 0.40%
Aus67 100.00% 0.00%
Indica I375 3.47% 96.53%
Indica II213 37.09% 62.91%
Indica Intermediate210 24.29% 75.71%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 71.43% 28.57%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1001212172 C->T INTERGENIC None