Detailed information of SNP:
|
SNP ID:
sf1001224009(Gbrowse)
Chromosome: chr10 Position: 1224009 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 57.23% | 42.77% |
| All Indica | 799 | 89.36% | 10.64% |
| All Japonica | 495 | 2.22% | 97.78% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 333 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001224009 | A->T | LOC_Os10g02970(LOC_Os10g02970.1) | INTRON |