Detailed information of SNP:
|
SNP ID:
sf1001228554(Gbrowse)
Chromosome: chr10 Position: 1228554 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 57.21% | 42.79% |
| All Indica | 795 | 89.31% | 10.69% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 208 | 89.42% | 10.58% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001228554 | T->C | INTERGENIC | None |