Detailed information of SNP:
|
SNP ID:
sf1001241201(Gbrowse)
Chromosome: chr10 Position: 1241201 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 55.74% | 44.26% |
| All Indica | 799 | 86.98% | 13.02% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 65.73% | 34.27% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001241201 | C->G | INTERGENIC | None |