Detailed information of SNP:
SNP ID:
sf1001241982(Gbrowse)
Chromosome: chr10 Position: 1241982 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 60.72% | 39.28% |
All Indica | 798 | 95.61% | 4.39% |
All Japonica | 497 | 2.21% | 97.79% |
Aus | 67 | 95.52% | 4.48% |
Indica I | 375 | 98.67% | 1.33% |
Indica II | 213 | 92.96% | 7.04% |
Indica Intermediate | 210 | 92.86% | 7.14% |
Temperate Japonica | 335 | 0.30% | 99.70% |
Tropical Japonica | 94 | 7.45% | 92.55% |
Japonica Intermediate | 68 | 4.41% | 95.59% |
Group VI/Aromatic | 14 | 0.00% | 100.00% |
Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1001241982 | A->T | INTERGENIC | None |