Detailed information of SNP:
|
SNP ID:
sf1001243188(Gbrowse)
Chromosome: chr10 Position: 1243188 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 56.50% | 43.50% |
| All Indica | 797 | 57.97% | 42.03% |
| All Japonica | 496 | 50.40% | 49.60% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 46.93% | 53.07% |
| Indica II | 213 | 65.73% | 34.27% |
| Indica Intermediate | 209 | 69.86% | 30.14% |
| Temperate Japonica | 335 | 69.85% | 30.15% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001243188 | A->G | LOC_Os10g02990(LOC_Os10g02990.1) | Non-Synonymous SNP |