Detailed information of SNP:
|
SNP ID:
sf1001243460(Gbrowse)
Chromosome: chr10 Position: 1243460 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 61.71% | 38.29% |
| All Indica | 798 | 96.49% | 3.51% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001243460 | T->C | LOC_Os10g02990(LOC_Os10g02990.1) | INTRON |
| sf1001243460 | T->C | LOC_Os10g02990(LOC_Os10g02990.1) | SNPs that disrupt splice sites |