Detailed information of SNP:
|
SNP ID:
sf1001245137(Gbrowse)
Chromosome: chr10 Position: 1245137 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1344 | 94.42% | 5.58% |
| All Indica | 740 | 90.41% | 9.59% |
| All Japonica | 489 | 99.18% | 0.82% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 339 | 85.55% | 14.45% |
| Indica II | 203 | 97.04% | 2.96% |
| Indica Intermediate | 198 | 91.92% | 8.08% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 96.70% | 3.30% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001245137 | C->T | INTERGENIC | None |