Detailed information of SNP:
|
SNP ID:
sf1001245138(Gbrowse)
Chromosome: chr10 Position: 1245138 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1339 | 94.62% | 5.38% |
| All Indica | 735 | 90.75% | 9.25% |
| All Japonica | 489 | 99.39% | 0.61% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 335 | 86.57% | 13.43% |
| Indica II | 204 | 96.08% | 3.92% |
| Indica Intermediate | 196 | 92.35% | 7.65% |
| Temperate Japonica | 331 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 97.14% | 2.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001245138 | A->G | INTERGENIC | None |