Detailed information of SNP:
|
SNP ID:
sf1001246748(Gbrowse)
Chromosome: chr10 Position: 1246748 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 97.87% | 2.13% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 490 | 96.12% | 3.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 96.68% | 3.32% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001246748 | T->C | INTERGENIC | None |