Detailed information of SNP:
SNP ID:
sf1001246845(Gbrowse)
Chromosome: chr10 Position: 1246845 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 95.84% | 4.16% |
All Indica | 799 | 97.12% | 2.88% |
All Japonica | 497 | 97.99% | 2.01% |
Aus | 67 | 70.15% | 29.85% |
Indica I | 375 | 99.47% | 0.53% |
Indica II | 213 | 92.49% | 7.51% |
Indica Intermediate | 211 | 97.63% | 2.37% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 92.55% | 7.45% |
Japonica Intermediate | 68 | 95.59% | 4.41% |
Group VI/Aromatic | 14 | 64.29% | 35.71% |
Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1001246845 | C->T | INTERGENIC | None |