Detailed information of SNP:
|
SNP ID:
sf1001273253(Gbrowse)
Chromosome: chr10 Position: 1273253 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 73.33% | 26.67% |
| All Indica | 796 | 95.60% | 4.40% |
| All Japonica | 489 | 35.58% | 64.42% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 331 | 17.82% | 82.18% |
| Tropical Japonica | 90 | 81.11% | 18.89% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001273253 | G->T | INTERGENIC | None |