Detailed information of SNP:
|
SNP ID:
sf1001286526(Gbrowse)
Chromosome: chr10 Position: 1286526 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1336 | 88.25% | 11.75% |
| All Indica | 747 | 83.67% | 16.33% |
| All Japonica | 474 | 96.62% | 3.38% |
| Aus | 61 | 85.25% | 14.75% |
| Indica I | 342 | 90.35% | 9.65% |
| Indica II | 200 | 70.50% | 29.50% |
| Indica Intermediate | 205 | 85.37% | 14.63% |
| Temperate Japonica | 327 | 97.86% | 2.14% |
| Tropical Japonica | 85 | 91.76% | 8.24% |
| Japonica Intermediate | 62 | 96.77% | 3.23% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001286526 | T->C | LOC_Os10g03070(LOC_Os10g03070.1) | INTRON |