Detailed information of SNP:
|
SNP ID:
sf1001299029(Gbrowse)
Chromosome: chr10 Position: 1299029 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 58.76% | 41.24% |
| All Indica | 787 | 84.37% | 15.63% |
| All Japonica | 489 | 24.34% | 75.66% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 370 | 89.19% | 10.81% |
| Indica II | 207 | 78.26% | 21.74% |
| Indica Intermediate | 210 | 81.90% | 18.10% |
| Temperate Japonica | 331 | 10.88% | 89.12% |
| Tropical Japonica | 91 | 58.24% | 41.76% |
| Japonica Intermediate | 67 | 44.78% | 55.22% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001299029 | G->A | INTERGENIC | None |