Detailed information of SNP:



SNP ID: sf1001299089(Gbrowse)

Chromosome: chr10

Position: 1299089
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1398 72.82% 27.18%
All Indica787 94.03% 5.97%
All Japonica490 34.90% 65.10%
Aus67 95.52% 4.48%
Indica I366 94.26% 5.74%
Indica II210 93.33% 6.67%
Indica Intermediate211 94.31% 5.69%
Temperate Japonica331 17.52% 82.48%
Tropical Japonica93 77.42% 22.58%
Japonica Intermediate66 62.12% 37.88%
Group VI/Aromatic12 58.33% 41.67%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1001299089 T->C INTERGENIC None