Detailed information of SNP:
SNP ID:
sf1001299089(Gbrowse)
Chromosome: chr10 Position: 1299089 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1398 | 72.82% | 27.18% |
All Indica | 787 | 94.03% | 5.97% |
All Japonica | 490 | 34.90% | 65.10% |
Aus | 67 | 95.52% | 4.48% |
Indica I | 366 | 94.26% | 5.74% |
Indica II | 210 | 93.33% | 6.67% |
Indica Intermediate | 211 | 94.31% | 5.69% |
Temperate Japonica | 331 | 17.52% | 82.48% |
Tropical Japonica | 93 | 77.42% | 22.58% |
Japonica Intermediate | 66 | 62.12% | 37.88% |
Group VI/Aromatic | 12 | 58.33% | 41.67% |
Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1001299089 | T->C | INTERGENIC | None |