Detailed information of SNP:
|
SNP ID:
sf1001299089(Gbrowse)
Chromosome: chr10 Position: 1299089 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 72.82% | 27.18% |
| All Indica | 787 | 94.03% | 5.97% |
| All Japonica | 490 | 34.90% | 65.10% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 366 | 94.26% | 5.74% |
| Indica II | 210 | 93.33% | 6.67% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 331 | 17.52% | 82.48% |
| Tropical Japonica | 93 | 77.42% | 22.58% |
| Japonica Intermediate | 66 | 62.12% | 37.88% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001299089 | T->C | INTERGENIC | None |