Detailed information of SNP:
|
SNP ID:
sf1001305711(Gbrowse)
Chromosome: chr10 Position: 1305711 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1378 | 66.33% | 33.67% |
| All Indica | 775 | 90.06% | 9.94% |
| All Japonica | 484 | 26.65% | 73.35% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 365 | 89.04% | 10.96% |
| Indica II | 202 | 90.10% | 9.90% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 332 | 10.54% | 89.46% |
| Tropical Japonica | 86 | 72.09% | 27.91% |
| Japonica Intermediate | 66 | 48.48% | 51.52% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001305711 | C->T | INTERGENIC | None |