Detailed information of SNP:
|
SNP ID:
sf1001306658(Gbrowse)
Chromosome: chr10 Position: 1306658 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 72.58% | 27.42% |
| All Indica | 787 | 95.43% | 4.57% |
| All Japonica | 484 | 30.79% | 69.21% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 94.32% | 5.68% |
| Indica II | 207 | 95.17% | 4.83% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 331 | 11.48% | 88.52% |
| Tropical Japonica | 87 | 83.91% | 16.09% |
| Japonica Intermediate | 66 | 57.58% | 42.42% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001306658 | C->A | INTERGENIC | None |