Detailed information of SNP:
|
SNP ID:
sf1001316426(Gbrowse)
Chromosome: chr10 Position: 1316426 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 51.60% | 48.40% |
| All Indica | 771 | 22.96% | 77.04% |
| All Japonica | 485 | 90.72% | 9.28% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 366 | 20.49% | 79.51% |
| Indica II | 202 | 29.21% | 70.79% |
| Indica Intermediate | 203 | 21.18% | 78.82% |
| Temperate Japonica | 330 | 95.15% | 4.85% |
| Tropical Japonica | 89 | 80.90% | 19.10% |
| Japonica Intermediate | 66 | 81.82% | 18.18% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001316426 | C->T | INTERGENIC | None |