Detailed information of SNP:
|
SNP ID:
sf1001320050(Gbrowse)
Chromosome: chr10 Position: 1320050 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 50.11% | 49.89% |
| All Indica | 770 | 80.65% | 19.35% |
| All Japonica | 484 | 8.68% | 91.32% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 357 | 83.75% | 16.25% |
| Indica II | 210 | 74.76% | 25.24% |
| Indica Intermediate | 203 | 81.28% | 18.72% |
| Temperate Japonica | 330 | 3.33% | 96.67% |
| Tropical Japonica | 90 | 20.00% | 80.00% |
| Japonica Intermediate | 64 | 20.31% | 79.69% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001320050 | T->A | INTERGENIC | None |