Detailed information of SNP:
|
SNP ID:
sf1001331155(Gbrowse)
Chromosome: chr10 Position: 1331155 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 67.52% | 32.48% |
| All Indica | 787 | 95.55% | 4.45% |
| All Japonica | 493 | 18.26% | 81.74% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 365 | 92.88% | 7.12% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 333 | 5.41% | 94.59% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 66 | 37.88% | 62.12% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001331155 | A->G | LOC_Os10g03150(LOC_Os10g03150.1) | INTRON |