Detailed information of SNP:
|
SNP ID:
sf1001339915(Gbrowse)
Chromosome: chr10 Position: 1339915 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 92.94% | 7.06% |
| All Indica | 787 | 93.90% | 6.10% |
| All Japonica | 484 | 93.18% | 6.82% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 369 | 92.95% | 7.05% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 84 | 65.48% | 34.52% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001339915 | T->C | LOC_Os10g03170(LOC_Os10g03170.1) | Non-Synonymous SNP |