Detailed information of SNP:
|
SNP ID:
sf1001342418(Gbrowse)
Chromosome: chr10 Position: 1342418 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1381 | 95.66% | 4.34% |
| All Indica | 775 | 97.81% | 2.19% |
| All Japonica | 485 | 93.81% | 6.19% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 363 | 98.90% | 1.10% |
| Indica II | 208 | 97.60% | 2.40% |
| Indica Intermediate | 204 | 96.08% | 3.92% |
| Temperate Japonica | 333 | 97.30% | 2.70% |
| Tropical Japonica | 84 | 82.14% | 17.86% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001342418 | A->G | INTERGENIC | None |