Detailed information of SNP:
|
SNP ID:
sf1001343017(Gbrowse)
Chromosome: chr10 Position: 1343017 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 94.70% | 5.30% |
| All Indica | 786 | 98.47% | 1.53% |
| All Japonica | 487 | 91.38% | 8.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 98.91% | 1.09% |
| Indica II | 209 | 98.56% | 1.44% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 87 | 70.11% | 29.89% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001343017 | C->T | INTERGENIC | None |