Detailed information of SNP:
|
SNP ID:
sf1001347277(Gbrowse)
Chromosome: chr10 Position: 1347277 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 97.55% | 2.45% |
| All Indica | 769 | 97.79% | 2.21% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 364 | 99.18% | 0.82% |
| Indica II | 202 | 96.04% | 3.96% |
| Indica Intermediate | 203 | 97.04% | 2.96% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001347277 | C->T | LOC_Os10g03190(LOC_Os10g03190.1) | INTRON |