Detailed information of SNP:
|
SNP ID:
sf1001348920(Gbrowse)
Chromosome: chr10 Position: 1348920 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 74.62% | 25.38% |
| All Indica | 788 | 98.22% | 1.78% |
| All Japonica | 477 | 30.82% | 69.18% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 369 | 98.10% | 1.90% |
| Indica II | 209 | 98.09% | 1.91% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 324 | 12.96% | 87.04% |
| Tropical Japonica | 91 | 73.63% | 26.37% |
| Japonica Intermediate | 62 | 61.29% | 38.71% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001348920 | T->C | INTERGENIC | None |