Detailed information of SNP:
|
SNP ID:
sf1001350789(Gbrowse)
Chromosome: chr10 Position: 1350789 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 96.69% | 3.31% |
| All Indica | 773 | 94.57% | 5.43% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 369 | 95.39% | 4.61% |
| Indica II | 202 | 96.53% | 3.47% |
| Indica Intermediate | 202 | 91.09% | 8.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001350789 | C->T | INTERGENIC | None |