Detailed information of SNP:
|
SNP ID:
sf1001362188(Gbrowse)
Chromosome: chr10 Position: 1362188 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 57.50% | 42.50% |
| All Indica | 795 | 59.75% | 40.25% |
| All Japonica | 496 | 51.21% | 48.79% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 58.93% | 41.07% |
| Indica II | 213 | 49.77% | 50.23% |
| Indica Intermediate | 207 | 71.50% | 28.50% |
| Temperate Japonica | 334 | 70.36% | 29.64% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001362188 | G->T | INTERGENIC | None |