Detailed information of SNP:
|
SNP ID:
sf1001363473(Gbrowse)
Chromosome: chr10 Position: 1363473 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1364 | 78.67% | 21.33% |
| All Indica | 745 | 96.78% | 3.22% |
| All Japonica | 497 | 51.71% | 48.29% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 173 | 93.06% | 6.94% |
| Indica Intermediate | 198 | 95.45% | 4.55% |
| Temperate Japonica | 335 | 70.15% | 29.85% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001363473 | A->C | INTERGENIC | None |