Detailed information of SNP:
|
SNP ID:
sf1001366328(Gbrowse)
Chromosome: chr10 Position: 1366328 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 79.27% | 20.73% |
| All Indica | 798 | 69.92% | 30.08% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 374 | 62.57% | 37.43% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001366328 | G->A | LOC_Os10g03240(LOC_Os10g03240.1) | INTRON |