Detailed information of SNP:
|
SNP ID:
sf1001375187(Gbrowse)
Chromosome: chr10 Position: 1375187 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1257 | 57.84% | 42.16% |
| All Indica | 685 | 74.16% | 25.84% |
| All Japonica | 476 | 31.72% | 68.28% |
| Aus | 53 | 73.58% | 26.42% |
| Indica I | 328 | 70.73% | 29.27% |
| Indica II | 189 | 83.60% | 16.40% |
| Indica Intermediate | 168 | 70.24% | 29.76% |
| Temperate Japonica | 326 | 24.23% | 75.77% |
| Tropical Japonica | 88 | 36.36% | 63.64% |
| Japonica Intermediate | 62 | 64.52% | 35.48% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 32 | 68.75% | 31.25% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001375187 | A->T | LOC_Os10g03250(LOC_Os10g03250.1) | Synonymous |