Detailed information of SNP:
|
SNP ID:
sf1001384286(Gbrowse)
Chromosome: chr10 Position: 1384286 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 85.48% | 14.52% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 497 | 66.80% | 33.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 70.45% | 29.55% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001384286 | C->T | LOC_Os10g03270(LOC_Os10g03270.1) | INTRON |