Detailed information of SNP:
|
SNP ID:
sf1001384351(Gbrowse)
Chromosome: chr10 Position: 1384351 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 84.11% | 15.89% |
| All Indica | 798 | 90.85% | 9.15% |
| All Japonica | 477 | 73.79% | 26.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 74.06% | 25.94% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 318 | 79.87% | 20.13% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 66 | 31.82% | 68.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001384351 | C->T | LOC_Os10g03270(LOC_Os10g03270.1) | INTRON |