Detailed information of SNP:
|
SNP ID:
sf1001387564(Gbrowse)
Chromosome: chr10 Position: 1387564 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 77.88% | 22.12% |
| All Indica | 795 | 70.69% | 29.31% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 373 | 63.27% | 36.73% |
| Indica II | 212 | 78.77% | 21.23% |
| Indica Intermediate | 210 | 75.71% | 24.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001387564 | C->T | INTERGENIC | None |