Detailed information of SNP:
|
SNP ID:
sf1001391034(Gbrowse)
Chromosome: chr10 Position: 1391034 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 50.99% | 49.01% |
| All Indica | 798 | 57.77% | 42.23% |
| All Japonica | 497 | 48.49% | 51.51% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 57.60% | 42.40% |
| Indica II | 212 | 50.00% | 50.00% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 335 | 69.55% | 30.45% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1001391034 | T->C | INTERGENIC | None |